If you have been searching for a dessert that combines the creamy, tangy richness of cheesecake with the sweet, warm comfort of spiced apples, look no further. This Gluten Free Apple Cheesecake Bars Recipe offers a perfect harmony of flavors and textures wrapped up in a conveniently portable bar form. Each bite brings together a crisp gluten-free crust, a luscious cheesecake layer, and tender caramelized apples that make these bars irresistibly delicious. Whether you’re catering to gluten sensitivities or just want a delightful treat, this recipe is a must-try for dessert lovers everywhere.

Ingredients You’ll Need
The beauty of this recipe lies in its simple, thoughtfully chosen ingredients that work together to create a flavor-packed experience. Each component plays an essential role in texture, sweetness, or that special hint of spice that brings these apple cheesecake bars alive.
- Gluten-free graham cracker crumbs (1 1/2 cups): A sturdy and flavorful base that holds the crust together without gluten.
- Melted butter (1/4 cup): Adds richness and helps the crust bind perfectly.
- Sugar (1/4 cup): Sweetens the crust for that perfect balance.
- Cream cheese (16 oz, softened): The star of the cheesecake layer, bringing creamy tang.
- Granulated sugar (1/2 cup): Sweetens the cheesecake filling without overpowering.
- Vanilla extract (1 teaspoon): Provides warmth and depth of flavor.
- Eggs (2 large): Helps set the cheesecake with a smooth, firm texture.
- Sour cream (1/4 cup): Adds a slight tang and creaminess to keep the filling moist.
- Gluten-free flour or cornstarch (1 tablespoon): Stabilizes the filling to prevent cracks.
- Apples (2 medium, peeled, cored, sliced): The fresh, tender apples add juicy sweetness and texture.
- Butter (2 tablespoons): Used for caramelizing the apples, creating a rich coating.
- Brown sugar (2 tablespoons): Adds deep caramel notes to the apples.
- Cinnamon (1 teaspoon): Infuses the apples with warm, cozy spice.
- Lemon juice (1 tablespoon): Brightens the apple topping and balances sweetness.
How to Make Gluten Free Apple Cheesecake Bars Recipe
Step 1: Prepare and Bake the Gluten-Free Crust
Start by preheating your oven to 325°F (163°C) and lining an 8×8-inch baking pan with parchment paper to ensure easy removal later. Stir together the gluten-free graham cracker crumbs, melted butter, and sugar until everything is moistened and crumbly. Press this mixture firmly and evenly into the bottom of the pan to create a solid crust base. Bake for 8 to 10 minutes until it turns a beautiful golden color and feels set to the touch. Let it cool completely so it won’t mix with the filling and stays crisp.
Step 2: Whip up the Creamy Cheesecake Filling
In a mixing bowl, beat the softened cream cheese and granulated sugar until smooth and fluffy, which usually takes a couple of minutes. Next, add in the vanilla extract, eggs, sour cream, and gluten-free flour or cornstarch. Mix gently just until everything is fully combined, being careful not to overbeat. Pour this luscious filling evenly over the cooled crust and smooth the surface with a spatula. Bake again for 25 to 30 minutes until the edges are set but the center jiggles slightly when moved. This gives you that perfect creamy texture. Let the cheesecake come to room temperature afterward.
Step 3: Caramelize the Apples
While the cheesecake bakes and cools, melt butter in a skillet over medium heat. Add the thinly sliced apples along with brown sugar, cinnamon, and lemon juice. Cook them gently for five to seven minutes, stirring occasionally, until the apples are tender, glossy, and caramelized. This step infuses them with warm spices and a rich sweetness, elevating the final topping. Remove from heat and allow them to cool to avoid melting the cheesecake topping later.
Step 4: Assemble and Chill
Once your cheesecake layer has cooled, it’s time to pile on those gorgeous caramelized apples. Spread the apples evenly over the cheesecake, making sure every bite will have that fruity goodness. Refrigerate the entire pan for at least two hours, or preferably overnight, so the bars set firmly and flavors meld beautifully.
Step 5: Slice and Serve
Remove the bars from the pan by lifting the parchment paper. Place on a cutting board and slice into 9 or more squares depending on your desired size. These bars are ready to enjoy as a comforting snack, dessert, or even a breakfast treat with a cup of coffee. Just watching the layers come together with each bite is utterly satisfying.
How to Serve Gluten Free Apple Cheesecake Bars Recipe

Garnishes
Sprinkle a light dusting of powdered sugar or a handful of chopped walnuts on top for added crunch and visual appeal. A drizzle of caramel sauce enhances the dessert’s rich sweetness and ties the flavors together. Fresh apple slices with a hint of cinnamon also work beautifully as a vibrant garnish.
Side Dishes
Pair these bars with a scoop of vanilla bean ice cream or a dollop of lightly whipped cream to complement the creamy texture. A cup of hot chai tea or spiced cider echoes the warm cinnamon notes and makes for a cozy pairing perfect for cooler days.
Creative Ways to Present
For a lovely dessert platter, serve the bars alongside caramel-dipped apple slices and a small bowl of cinnamon-spiced nuts. You could also layer crumbled bars into parfait glasses with whipped cream and fresh apples for a deconstructed twist. These ideas make the Gluten Free Apple Cheesecake Bars Recipe feel even more special for holiday dinners or casual get-togethers.
Make Ahead and Storage
Storing Leftovers
Place any leftover bars in an airtight container and keep them refrigerated. They will stay fresh for up to four days, maintaining their creamy texture and spiced apple topping without drying out or softening too much.
Freezing
These cheesecake bars freeze beautifully. Wrap individual bars tightly in plastic wrap and place them in a freezer-safe container or bag for up to two months. Thaw overnight in the refrigerator before serving to retain the best texture and flavor.
Reheating
If you desire a warm treat, gently reheat the bars in the microwave for 15 to 20 seconds. Avoid long reheating to prevent the cheesecake from becoming grainy. Enjoy warm with your favorite topping for a cozy dessert experience.
FAQs
Can I use different types of apples for this recipe?
Absolutely! Granny Smith, Honeycrisp, or Fuji apples all work wonderfully. Just choose apples that hold their shape well when cooked and provide a balance of tartness and sweetness to complement the creamy cheesecake.
What gluten-free flours are best for the crust?
Gluten-free graham cracker crumbs are ideal and widely available, but you can substitute with gluten-free cookie crumbs or even a blend of almond and oat flour for a different flavor profile.
Is it possible to make this recipe dairy-free?
While this recipe relies on cream cheese and butter for its signature texture and taste, you can experiment with dairy-free cream cheese alternatives and plant-based butter. Keep in mind the texture might differ slightly but can still be delicious.
How do I know when the cheesecake filling is done baking?
The edges should be set and firm, while the center will have a gentle jiggle when you gently shake the pan. This ensures the cheesecake will be creamy and not overbaked, which can cause cracks or dryness.
Can I prepare the caramelized apples in advance?
Yes! You can caramelize the apples up to one day ahead. Store them in an airtight container in the refrigerator and bring them to room temperature before topping the bars to prevent chilling the cheesecake.
Final Thoughts
Trust me when I say this Gluten Free Apple Cheesecake Bars Recipe is one of those desserts that will quickly earn a special place in your baking repertoire. It combines ease, incredible flavor, and beautiful presentation all at once. Whether for a crowd or a cozy moment on your own, these bars bring joy with every bite. So grab your ingredients, try out this recipe, and prepare for compliments aplenty. Happy baking and indulgence ahead!
Print
Gluten Free Apple Cheesecake Bars Recipe
- Prep Time: 15 minutes
- Cook Time: 40 minutes
- Total Time: 2 hours 55 minutes
- Yield: 9 bars
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Gluten Free
Description
These Gluten Free Apple Cheesecake Bars feature a buttery gluten-free graham cracker crust topped with a creamy, smooth cheesecake filling and finished with caramelized apple slices. Perfectly spiced with cinnamon and sweetened with brown sugar, these bars offer a delightful combination of textures and flavors ideal for a sophisticated dessert or a tasty snack.
Ingredients
Crust
- 1 1/2 cups gluten-free graham cracker crumbs (or gluten-free cookie crumbs)
- 1/4 cup melted butter
- 1/4 cup sugar
Cheesecake Filling
- 16 oz (2 cups) cream cheese, softened
- 1/2 cup granulated sugar
- 1 teaspoon vanilla extract
- 2 large eggs
- 1/4 cup sour cream
- 1 tablespoon all-purpose gluten-free flour (or cornstarch)
Caramelized Apples
- 2 medium apples, peeled, cored, and thinly sliced
- 2 tablespoons butter
- 2 tablespoons brown sugar
- 1 teaspoon cinnamon
- 1 tablespoon lemon juice
Instructions
- Prepare the crust: Preheat your oven to 325°F (163°C) and line an 8×8-inch baking pan with parchment paper. In a mixing bowl, combine gluten-free graham cracker crumbs, melted butter, and sugar until the mixture is well combined. Press this mixture firmly into the bottom of the prepared pan to create an even crust layer. Bake it in the oven for 8 to 10 minutes until the crust is golden and set. Remove from the oven and allow it to cool completely.
- Make the cheesecake filling: In a large bowl, beat the softened cream cheese with granulated sugar until smooth and creamy. Add vanilla extract, eggs, sour cream, and gluten-free flour to the mixture, blending thoroughly until fully incorporated and smooth. Pour this cheesecake batter evenly over the cooled crust, smoothing the surface with a spatula. Return the pan to the oven and bake for 25 to 30 minutes, or until the center is just slightly jiggly when shaken. Remove from the oven and let cool to room temperature.
- Caramelize the apples: While the cheesecake cools, heat a skillet over medium heat and melt the butter. Add the peeled, cored, and thinly sliced apples along with brown sugar, cinnamon, and lemon juice. Cook the apples for 5 to 7 minutes, stirring occasionally, until they become tender and nicely caramelized. Remove the skillet from the heat and allow the apples to cool.
- Assemble and chill: Once the cheesecake has completely cooled, evenly spread the caramelized apple mixture over the top of the cheesecake layer. Place the pan in the refrigerator and chill for at least 2 hours, or preferably overnight, so the bars set firmly.
- Serve: After chilling, remove the cheesecake from the pan using the parchment paper edges. Slice into 9 equal bars and enjoy your delicious gluten-free apple cheesecake bars.
Notes
- Ensure cream cheese is fully softened for the smoothest filling texture.
- Use a sharp knife to slice the bars cleanly after chilling.
- For extra flavor, sprinkle a pinch of cinnamon on top before serving.
- These bars keep well refrigerated for up to 3 days.
- You can substitute the apples with pears for a variation.

